Nature

none; (JOURNAL ARTICLE)

Patterns of somatic mutation in human cancer genomes.

Greenman, Stephens, Smith, Dalgliesh, Hunter, Bignell, Davies, Teague, Butler, Stevens, Edkins, O'Meara, Vastrik, Schmidt, Avis, Barthorpe, Bhamra, Buck, Choudhury, Clements, Cole, Dicks, Forbes, Gray, Halliday, Harrison, Hills, Hinton, Jenkinson, Jones, Menzies, Mironenko, Perry, Raine, Richardson, Shepherd, Small, Tofts, Varian, Webb, West, Widaa, Yates, Cahill, Louis, Goldstraw, Nicholson, Brasseur, Looijenga, Weber, Chiew, DeFazio, Greaves, Green, Campbell, Birney, Easton, Chenevix-Trench, Tan, Khoo, Teh, Yuen, Leung, Wooster, Futreal, Stratton; (Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't)

Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

Lo, Denef, Verberkmoes, Shah, Goltsman, Dibartolo, Tyson, Allen, Ram, Detter, Richardson, Thelen, Hettich, Banfield; (JOURNAL ARTICLE)

Scanning-tunnelling spectra of cuprates.

Hwang, Timusk, Carbotte; (Comment, Journal Article)

Polar research: the new face of the Arctic.

Schiermeier; (News)

Scriptural violence can foster aggression.

Ledford; (News)

The ends of the Earth.

none; (Editorial)

A place in the sun.

Abbott; (Journal Article)

Tools for drug discovery: tools of the trade.

Smith; (Journal Article)

No more hot air.

none; (Editorial)

Origin of avian genome size and structure in non-avian dinosaurs.

Organ, Shedlock, Meade, Pagel, Edwards; (Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't, Research Support, U.S. Gov't, Non-P.H.S.)

Tools for drug discovery: In silico screening with chemical informatics.

none; (Journal Article)

Abstractions.

none; (JOURNAL ARTICLE)

Our Solar System last week.

Sanderson, Brumfiel; (News)

Polar research: polar year projects.

Odling-Smee; (News)

Meridiani Planum and the global hydrology of Mars.

Andrews-Hanna, Phillips, Zuber; (Journal Article, Research Support, U.S. Gov't, Non-P.H.S.)

Design chosen for nuclear warheads.

Odling-Smee; (News)

Cancer: drivers and passengers.

Haber, Settleman; (Comment, News)

Autocatalytic cleavage of Clostridium difficile toxin B.

Reineke, Tenzer, Rupnik, Koschinski, Hasselmayer, Schrattenholz, Schild, von Eichel-Streiber; (JOURNAL ARTICLE)

Tools for drug discovery: Ion channels get automated.

none; (Journal Article)

Tools for drug discovery: Table of suppliers.

none; (Journal Article)

50 & 100 Years Ago.

none; (JOURNAL ARTICLE)

Correction.

none; (JOURNAL ARTICLE)

Polar research: school of rock.

Witze; (News)

Biobank provides leads for selecting guide dogs.

Fuyuno; (News)

Immortality of a kind.

Hopwood; (JOURNAL ARTICLE)

Research highlights.

none; (JOURNAL ARTICLE)

Endonuclease-independent LINE-1 retrotransposition at mammalian telomeres.

Morrish, Garcia-Perez, Stamato, Taccioli, Sekiguchi, Moran; (Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't)

Asteroids: Spun in the sun.

Bottke; (JOURNAL ARTICLE)

Plant biology: the force from without.

Scheres; (Comment, News)

Abderhalden's fraud still wins him some supporters.

Kutschera; (Comment, Letter)

News in brief.

none; (JOURNAL ARTICLE)

Observation of the two-channel Kondo effect.

Potok, Rau, Shtrikman, Oreg, Goldhaber-Gordon; (Journal Article, Research Support, Non-U.S. Gov't, Research Support, U.S. Gov't, Non-P.H.S.)

Keeping faith with trial volunteers.

Piccart, Goldhirsch, Wood, Pritchard, Baselga, Reaby, Kössler, Kyriakides, Norton, Coates; (Journal Article)

Acceleration of the rotation of asteroid 1862 Apollo by radiation torques.

Kaasalainen, Durech, Warner, Krugly, Gaftonyuk; (JOURNAL ARTICLE)

Planetary science: water cycling on Mars.

Baker; (Comment, News)

The epidermis both drives and restricts plant shoot growth.

Savaldi-Goldstein, Peto, Chory; (Journal Article, Research Support, Non-U.S. Gov't, Research Support, U.S. Gov't, Non-P.H.S.)

Market watch.

Macilwain; (JOURNAL ARTICLE)

An ancient nova shell around the dwarf nova Z Camelopardalis.

Shara, Martin, Seibert, Rich, Salim, Reitzel, Schiminovich, Deliyannis, Sarrazine, Kulkarni, Ofek, Brosch, Lépine, Zurek, De Marco, Jacoby; (Journal Article, Research Support, U.S. Gov't, Non-P.H.S.)

The changing view of autism.

Wing; (JOURNAL ARTICLE)

Chemical reduction of three-dimensional silica micro-assemblies into microporous silicon replicas.

Bao, Weatherspoon, Shian, Cai, Graham, Allan, Ahmad, Dickerson, Church, Kang, Abernathy, Summers, Liu, Sandhage; (Journal Article, Research Support, U.S. Gov't, Non-P.H.S.)

Fossils: new journal will oppose illegal trade.

Triebold; (Comment, Letter)

p53-induced inhibition of Hif-1 causes cardiac dysfunction during pressure overload.

Sano, Minamino, Toko, Miyauchi, Orimo, Qin, Akazawa, Tateno, Kayama, Harada, Shimizu, Asahara, Hamada, Tomita, Molkentin, Zou, Komuro; (JOURNAL ARTICLE)

Materials science: silicon life forms.

Norris; (Comment, News)

A scientific symphony.

Pesic; (JOURNAL ARTICLE)

Evolutionary biology: the Elvis paradox.

Hendry; (News)

Making the paper: Ian Harding.

none; (JOURNAL ARTICLE)

Control without hierarchy.

Gordon; (Journal Article)

Tackling tuberculosis.

none; (Editorial)

Superconductivity two decades on.

Brumfiel; (News)

Key anniversary.

none; (JOURNAL ARTICLE)

Western states launch carbon scheme.

Marris; (News)

Sidelines.

none; (JOURNAL ARTICLE)

Life at the poles.

none; (JOURNAL ARTICLE)

A Moon base offers more than just a good view.

Barry; (Comment, Letter)

Georgia on the mind.

Smaglik; (Journal Article)

Polar research: buried treasure.

Jones; (News)

Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia.

Mullighan, Goorha, Radtke, Miller, Coustan-Smith, Dalton, Girtman, Mathew, Ma, Pounds, Su, Pui, Relling, Evans, Shurtleff, Downing; (JOURNAL ARTICLE)

Science

Environment meets health, again.

Jackson; (Editorial)

U.S. science policy. Report tells NSF to think more boldly.

Mervis; (News)

Evolution. Jurassic genome.

Zimmer; (News)

Histone replacement marks the boundaries of cis-regulatory domains.

Mito, Henikoff, Henikoff; (Journal Article)

Ecological speciation in South Atlantic island finches.

Ryan, Bloomer, Moloney, Grant, Delport; (Journal Article, Research Support, Non-U.S. Gov't)

Coupling diurnal cytosolic Ca2+ oscillations to the CAS-IP3 pathway in Arabidopsis.

Tang, Han, Zheng, Cook, Choi, Woerner, Jackson, Pei; (Journal Article, Research Support, Non-U.S. Gov't, Research Support, U.S. Gov't, Non-P.H.S.)

Physics. Watching rush hour in the world of electrons.

Zaanen; (Comment, Journal Article)

Super plastic bulk metallic glasses at room temperature.

Liu, Wang, Wang, Zhao, Pan, Wang; (Journal Article, Research Support, Non-U.S. Gov't)

A Plant Receptor with a Big Family.

Grill, Christmann; (JOURNAL ARTICLE)

Evolution. Robot suggests how the first land animals got walking.

Pennisi; (Comment, News)

Meteorology. A dose of dust that quieted an entire hurricane season?

Kerr; (News)

Cell biology. What a cell should know (but may not).

Weinert; (Comment, Journal Article)

From swimming to walking with a salamander robot driven by a spinal cord model.

Ijspeert, Crespi, Ryczko, Cabelguen; (Journal Article, Research Support, Non-U.S. Gov't)

Direct Detection of the Asteroidal YORP Effect.

Lowry, Fitzsimmons, Pravec, Vokrouhlicky, Boehnhardt, Taylor, Galád, Irwin, Irwin, Kusnirák; (JOURNAL ARTICLE)

Anaphase onset before complete DNA replication with intact checkpoint responses.

Torres-Rosell, De Piccoli, Cordon-Preciado, Farmer, Jarmuz, Machin, Pasero, Lisby, Haber, Aragón; (Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't)

Biochemistry. A new target for antibiotic development.

Wright; (Comment, Journal Article)

Structural insight into the transglycosylation step of bacterial cell-wall biosynthesis.

Lovering, de Castro, Lim, Strynadka; (Journal Article, Research Support, Non-U.S. Gov't)

Immunology. Eating in to avoid infection.

Reis e Sousa; (Comment, Journal Article)

Applied physics. Oxide electronics emerge.

Ramirez; (Comment, Journal Article)

Multifunctional encoded particles for high-throughput biomolecule analysis.

Pregibon, Toner, Doyle; (Journal Article, Research Support, Non-U.S. Gov't, Research Support, U.S. Gov't, Non-P.H.S.)

Research facilities. China supersizes its science.

Hao, Jia; (News)

Nuclear weapons. Livermore Lab dips into the past to win weapons design contest.

Kintisch; (News)

Dynamics of replication-independent histone turnover in budding yeast.

Dion, Kaplan, Kim, Buratowski, Friedman, Rando; (Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't)

Retrovirus meeting. Hope on new AIDS drugs, but breast-feeding strategy backfires.

Cohen; (News)

Did the Olmec know how to write?

Bruhns, Kelker; (Comment, Letter)

Odor cues during slow-wave sleep prompt declarative memory consolidation.

Rasch, Büchel, Gais, Born; (Journal Article, Research Support, Non-U.S. Gov't)

A G Protein-Coupled Receptor Is a Plasma Membrane Receptor for the Plant Hormone Abscisic Acid.

Liu, Yue, Li, Nie, Li, Wu, Ma; (JOURNAL ARTICLE)

Inverse relations between amounts of air pollution and orographic precipitation.

Rosenfeld, Dai, Yu, Yao, Xu, Yang, Du; (Journal Article, Research Support, Non-U.S. Gov't)

Climate change CO2 arithmetic.

Broecker; (Journal Article)

Spin Rate of Asteroid (54509) 2000 PH5 Increasing Due to the YORP Effect.

Taylor, Margot, Vokrouhlicky, Scheeres, Pravec, Lowry, Fitzsimmons, Nolan, Ostro, Benner, Giorgini, Magri; (JOURNAL ARTICLE)

Hurricanes not the key to a sustainable coast.

Burkett, Groat, Reed; (Comment, Journal Article)

Wildlife studies. Researchers explore alternatives to elephant culling.

Koenig; (News)

Neuroscience. Hunting for meaning after midnight.

Miller; (Comment, News)

Nature Methods

High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy.

Verveer, Swoger, Pampaloni, Greger, Marcello, Stelzer; (JOURNAL ARTICLE)

Single-molecule analysis of DNA-protein complexes using nanopores.

Hornblower, Coombs, Whitaker, Kolomeisky, Picone, Meller, Akeson; (JOURNAL ARTICLE)

Nature Biotechnology

Recent patent applications in RNA interference.

none; (Journal Article)

News in brief.

none; (Journal Article)

People.

none; (Journal Article)

Messing with home brews.

none; (Journal Article)

A human phenome-interactome network of protein complexes implicated in genetic disorders.

Lage, Karlberg, Střrling, Olason, Pedersen, Rigina, Hinsby, Tümer, Pociot, Tommerup, Moreau, Brunak; (Journal Article)

A curated compendium of phosphorylation motifs.

Amanchy, Periaswamy, Mathivanan, Reddy, Tattikota, Pandey; (Journal Article)

Towards quantitative analysis of proteome dynamics.

Kühner, Gavin; (Journal Article)

Supreme Court boosts licensees in biotech patent battles.

Waltz; (Journal Article)

Public sector seeks to bridge 'valley of death'.

Moran; (Journal Article)

RNA interference has second helpings.

Miska, Ahringer; (Journal Article)

Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis.

Jeffries, Grigoriev, Grimwood, Laplaza, Aerts, Salamov, Schmutz, Lindquist, Dehal, Shapiro, Jin, Passoth, Richardson; (JOURNAL ARTICLE)

Negotiating the RNAi patent thicket.

Schmidt; (Journal Article)

Toll-free vaccines?

Krieg; (Journal Article)

Incretin mimetics vie for slice of type 2 diabetes market.

Shaffer; (Journal Article)

Agbiotech booms in emerging nations.

Lawrence; (Journal Article)

Overhauling clinical trials.

Scott, Baker; (Journal Article)

Biofuels and biocontainment.

Stewart; (Journal Article)

Research highlights.

none; (Journal Article)

Promoting angiogenesis to a fault.

Hicklin; (Journal Article)

Live dynamic imaging of caveolae pumping targeted antibody rapidly and specifically across endothelium in the lung.

Oh, Borgström, Witkiewicz, Li, Borgström, Chrastina, Iwata, Zinn, Baldwin, Testa, Schnitzer; (Journal Article)

US aims to tighten rules on direct-to-consumer drug ads.

Vastag; (Journal Article)

Research training and academic disciplines at the convergence of nanotechnology and biomedicine in the United States.

Kim; (Journal Article)

The threat from within: trade secret theft by employees.

Elliott; (Journal Article)

Two views of the emperor's new clones.

Miller; (Journal Article)

Flogging gardasil.

none; (Journal Article)

Democratizing proteomics data.

none; (Journal Article)

Sequence-activity relationships guide directed evolution.

Pelletier, Lortie; (JOURNAL ARTICLE)

Two views of the emperor's new clones.

Schubert; (Journal Article)

Nature Medicine

IFN-gamma mediates CD4(+) T-cell loss and impairs secondary antitumor responses after successful initial immunotherapy.

Berner, Liu, Zhou, Alderson, Sun, Weiss, Back, Longo, Blazar, Wiltrout, Welniak, Redelman, Murphy; (Journal Article)

Biomedical research faces flat budget for 2008.

Dove; (Journal Article)

The survival kit of Mycobacterium tuberculosis.

Warner, Mizrahi; (JOURNAL ARTICLE)

ASC-J9 ameliorates spinal and bulbar muscular atrophy phenotype via degradation of androgen receptor.

Yang, Chang, Yu, Yeh, Wu, Miyamoto, Merry, Sobue, Chen, Chang, Chang; (JOURNAL ARTICLE)

Activists protest National Parks proposal to profit from microbes.

Opar; (Journal Article)

Defining the 'survivasome' of Mycobacterium tuberculosis.

Lamichhane, Bishai; (Journal Article)

A plague upon fibrin.

Titball, Oyston; (Journal Article)

Profile: wafaa el-sadr.

Mandavilli; (Journal Article)

Mycobacterium tuberculosis virulence: lipids inside and out.

Ehrt, Schnappinger; (Journal Article)

Changing funding patterns in tuberculosis.

Kaufmann, Parida; (Journal Article)

From magic bullets back to the Magic Mountain: the rise of extensively drug-resistant tuberculosis.

Dorman, Chaisson; (Journal Article)

Reply to 'Alice Dautry' profile.

Bandeira, Barré-Sinoussi, Cazenave, Cole, Cumano, Di Santo, Guiso, Israël, Pereira, Vieira; (Journal Article)

News feature: Trials and tribulations.

Mandavilli; (Journal Article)

Plagues and people meet the microbe hunters.

Levin; (Journal Article)

The top twenty papers on tuberculosis.

none; (Journal Article)

Spotlight on... Ken duncan.

Opar; (Journal Article)

Tuberculosis.

none; (Journal Article)

News feature: WikiMedia.

Keim; (Journal Article)

Skin safety.

Schubert; (Journal Article)

Mycobacterial virulence and specialized secretion: same story, different ending.

Behr, Sherman; (Journal Article)

Airway epithelial gene expression in the diagnostic evaluation of smokers with suspect lung cancer.

Spira, Beane, Shah, Steiling, Liu, Schembri, Gilman, Dumas, Calner, Sebastiani, Sridhar, Beamis, Lamb, Anderson, Gerry, Keane, Lenburg, Brody; (Journal Article)

Unlikely partners tackle TB funding woes.

Check; (Journal Article)

Canceled conference puts conflicts of interest under scrutiny.

Keim; (Journal Article)

Research highlights.

none; (Journal Article)

Langerhans cells lap up HIV-1.

Schwartz; (Journal Article)

Regulatory T-cell development: is Foxp3 the decider?

Curiel; (Journal Article)

Cracking the cytokine code in psoriasis.

Nickoloff; (Journal Article)

Spotlight on... Mario raviglione.

Keim; (Journal Article)

From TB tests, just a 'yes or no' answer, please.

Marris; (Journal Article)

Research highlights.

none; (Journal Article)

When the vaccine causes disease.

Mandavilli; (Journal Article)

After decades of drought, new drug possibilities flood TB pipeline.

Check; (Journal Article)

Infrastructure, biotech top African science summit agenda.

Scott; (Journal Article)

Corrigendum: Functional engraftment of human ES cell-derived dopaminergic neurons enriched by coculture with telomerase-immortalized midbrain astrocytes.

Roy, Cleren, Singh, Yang, Beal, Goldman; (Journal Article)

Health agency pulls back on 'patronizing' approach to TB treatment.

Mandavilli; (Journal Article)

Langerin is a natural barrier to HIV-1 transmission by Langerhans cells.

de Witte, Nabatov, Pion, Fluitsma, de Jong, de Gruijl, Piguet, van Kooyk, Geijtenbeek; (Journal Article)

Too little, too late?

none; (Journal Article)

Virtually incurable TB warns of impending disaster.

Mandavilli; (Journal Article)

Do biomarkers trump behavior?

Amaral; (Journal Article)

Long-distance affair with adrenal GRK2 hangs up heart failure.

Liggett; (Journal Article)

News feature: A clash of cultures.

Mandavilli; (Journal Article)

Challenges in tuberculosis drug research and development.

Ginsberg, Spigelman; (Journal Article)

Spotlight on... Mark harrington.

Opar; (Journal Article)

Trials race rashly ahead for regulatory immune cells.

Braaten; (Journal Article)

Tuberculosis, a neglected opportunity?

Harper; (Journal Article)

Vaccine leads to memory loss.

Haanen, Schumacher; (Journal Article)

The ABCs of beta-cell dysfunction in type 2 diabetes.

Chakravarthy, Semenkovich; (Journal Article)

Aligning pharmaceutical innovation with medical need.

Nathan; (Journal Article)

A dozen vaccine candidates bring shot of hope to TB epidemic.

Marris; (Journal Article)

The open book of infectious diseases.

Sassetti, Rubin; (Journal Article)

Erratum: A brief history of T(H)17, the first major revision in the T(H)1/T(H)2 hypothesis of T cell-mediated tissue damage.

Steinman; (Journal Article)

Highly cited papers on tuberculosis (2003-2005).

none; (Journal Article)

AIDS gel's failure calls prevention approach into question.

Bolognesi; (Journal Article)

News in brief.

none; (Journal Article)

Nature Genetics

Genetic basis of individual differences in the response to small-molecule drugs in yeast.

Perlstein, Ruderfer, Roberts, Schreiber, Kruglyak; (JOURNAL ARTICLE)

Mitochondrial point mutations do not limit the natural lifespan of mice.

Vermulst, Bielas, Kujoth, Ladiges, Rabinovitch, Prolla, Loeb; (JOURNAL ARTICLE)

A recurrent mutation in MED12 leading to R961W causes Opitz-Kaveggia syndrome.

Risheg, Graham, Clark, Rogers, Opitz, Moeschler, Peiffer, May, Joseph, Jones, Stevenson, Schwartz, Friez; (JOURNAL ARTICLE)

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome.

Weber, Hellmann, Stadler, Ramos, Pääbo, Rebhan, Schübeler; (JOURNAL ARTICLE)

Molecular Medicine

Proteomics

Standardisation of rapid in-gel digestion by mass spectrometry.

Granvogl, Gruber, Eichacker; (Journal Article)

In this issue: Proteomics 5/2007.

none; (JOURNAL ARTICLE)

Proteomic analysis of dimorphic transition in the phytopathogenic fungus Ustilago maydis.

Böhmer, Colby, Böhmer, Bräutigam, Schmidt, Bölker; (Journal Article)

Proteomic and transcriptomic analysis of rice mature seed-derived callus differentiation.

Yin, Tao, Zhao, Shao, Li, Liu, Liu, Zhu; (Journal Article)

Two-dimensional gel electrophoresis as tool for proteomics studies in combination with protein identification by mass spectrometry.

Wittmann-Liebold, Graack, Pohl; (JOURNAL ARTICLE)

Call for 2008 Reviews Issue.

Dunn; (JOURNAL ARTICLE)

A proteome study of the proliferation of cultured Medicago truncatula protoplasts.

de Jong, Mathesius, Imin, Rolfe; (Journal Article)

The HUPO Pre-Congress Proteomics Standards Initiative Workshop HUPO 5(th) Annual World Congress Long Beach, CA, USA 28 October-1 November 2006.

Orchard, Jones, Stephan, Binz; (JOURNAL ARTICLE)

Publication Committee Meeting HUPO 5(th) Annual World Congress Long Beach, CA, USA 30 October 2006.

Orchard, Heck, Uhlen, Ping; (JOURNAL ARTICLE)

Proteomics for everyday use: Activities of the HUPO Brain Proteome Project during the 5(th) HUPO World Congress.

Hamacher, Stephan, Eisenacher, van Hall, Marcus, Martens, Park, Gutstein, Herberg, Meyer; (JOURNAL ARTICLE)

Nature Drug Discovery

BMC Bioinformatics

Visualization of three-way comparisons of omics data.

Baran, Robert, Suematsu, Soga, Tomita; (JOURNAL ARTICLE)

Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.

Sinha, Meller; (Journal Article)

Statistical tests to compare motif count exceptionalities.

Robin, Schbath, Vandewalle; (JOURNAL ARTICLE)

SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML).

Rodriguez, Donizelli, Le Novere; (JOURNAL ARTICLE)

TAMEE: data management and analysis for tissue microarrays.

Thallinger, Baumgartner, Pirklbauer, Uray, Pauritsch, Mehes, Buck, Zatloukal, Trajanoski; (JOURNAL ARTICLE)

A comparative study of S/MAR prediction tools.

Evans, Ott, Hansen, Koentges, Wernisch; (JOURNAL ARTICLE)

Bounds on the distribution of the number of gaps when circles and lines are covered by fragments: Theory and practical application to genomic and metagenomic projects.

Moriarty, Marchesi, Metcalfe; (Journal Article)

Gene selection with multiple ordering criteria.

Chen, Tsai, Tzeng, Chen; (JOURNAL ARTICLE)

Predicting mostly disordered proteins by using structure-unknown protein data.

Shimizu, Muraoka, Hirose, Tomii, Noguchi; (JOURNAL ARTICLE)

An efficient grid layout algorithm for biological networks utilizing various biological attributes.

Kojima, Nagasaki, Jeong, Kato, Miyano; (Journal Article)

Comparison of protein structures by growing neighborhood alignments.

Bhattacharya, Bhattacharyya, Chandra; (JOURNAL ARTICLE)

SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis.

Kahn, Ryan, Liu, Zeeberg, Jamison, Weinstein; (JOURNAL ARTICLE)

Orthology prediction at Scalable Resolution by Phylogenetic Tree analysis.

van der Heijden, Snel, van Noort, Huynen; (JOURNAL ARTICLE)

Bayesian meta-analysis models for microarray data: a comparative study.

Conlon, Song, Liu; (JOURNAL ARTICLE)

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.

Tkaczuk, Dunin-Horkawicz, Purta, Bujnicki; (JOURNAL ARTICLE)

Bioinformatics

BioGuideSRS: Querying Multiple Sources with a user-centric perspective.

Cohen-Boulakia, Biton, Davidson, Froidevaux; (JOURNAL ARTICLE)

EuSplice: A unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes.

Bhasi, Pandey, Utharasamy, Senapathy; (JOURNAL ARTICLE)

Andante: Reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities.

Smith, Lovell, Burke, Montalvao, Blundell; (JOURNAL ARTICLE)

Pooling mRNA in Microarray Experiments and its Effect on Power.

Zhang, Carriquiry, Nettleton, Dekkers; (JOURNAL ARTICLE)

AMPer: A Database and an Automated Discovery Tool for Antimicrobial Peptides.

Fjell, Hancock, Cherkasov; (JOURNAL ARTICLE)

Analyzing microarray data using CLANS.

Frickey, Weiller; (JOURNAL ARTICLE)

Comparative Annotation of Viral Genomes with Non-Conserved Gene Structure.

de Groot, Mailund, Hein; (JOURNAL ARTICLE)

From Structure to Dynamics of Metabolic Pathways: Application to the Plant Mitochondrial TCA Cycle.

Steuer, Nunes Nesi, Fernie, Gross, Blasius, Selbig; (JOURNAL ARTICLE)

GAPWM: A Genetic Algorithm Method for Optimizing a Position Weight Matrix.

Li, Liang, Bass; (JOURNAL ARTICLE)

Metabolic systems cost-benefit analysis for interpreting network structure and regulation.

Carlson; (JOURNAL ARTICLE)

Glycan classification with tree kernels.

Yamanishi, Bach, Vert; (JOURNAL ARTICLE)

ABCGrid: Application for Bioinformatics Computing Grid.

Sun, Zhao, Yu, Gao, Luo; (JOURNAL ARTICLE)

Metabolic Network Properties Help Assign Weights to Elementary Modes to Understand Physiological Flux Distributions.

Wang, Yang, Ma, Zhao; (JOURNAL ARTICLE)

codelink: An R package for analysis of GE Healthcare Gene Expression Bioarrays.

Diez, Alvarez, Dopazo; (JOURNAL ARTICLE)

Simulating Epstein-Barr Virus Infection with C-ImmSim.

Castiglione, Duca, Jarrah, Laubenbacher, Hochberg, Thorley-Lawson; (JOURNAL ARTICLE)

MedicCyc: a biochemical pathway database for Medicago truncatula.

Urbanczyk-Wochniak, Sumner; (JOURNAL ARTICLE)

De novo peptide sequencing using ion peak intensity and amino acid cleavage intensity ratio.

Kanazawa, Anyoji, Ogiwara, Nagashima; (JOURNAL ARTICLE)

pcaMethods - a Bioconductor package providing PCA methods for incomplete data.

Stacklies, Redestig, Scholz, Walther, Selbig; (JOURNAL ARTICLE)

A New Method to Measure the Semantic Similarity of GO Terms.

Wang, Du, Payattakool, Yu, Chen; (JOURNAL ARTICLE)

Proc Natl Acad Sci U S A

N Engl J Med

Chronic kidney disease, anemia, and epoetin.

Go, Ayus; (Comment, Letter)

Tolvaptan for hyponatremia.

Hoorn, Zietse; (Comment, Letter)

Islet transplantation.

Thompson, Fung, Warnock; (Comment, Letter)

Case 36-2006: a pregnant woman with new hypertension.

Khurana, Vinayek; (Comment, Letter)

Ethical challenges posed by the solicitation of deceased and living organ donors.

Hanto; (Journal Article)

Islet transplantation.

Vaksman; (Comment, Letter)

Prolonged bisphosphonate release after treatment in children.

Papapoulos, Cremers; (Letter)

Pioglitazone in nonalcoholic steatohepatitis.

Targher; (Comment, Letter)

Chronic kidney disease, anemia, and epoetin.

Mikhail, Goldsmith; (Comment, Letter)

Case 36-2006: a pregnant woman with new hypertension.

Stratakis; (Comment, Letter)

Retraction: Guo H. Complication of central venous catheterization. N Engl J Med 2007; 356: e2.

Guo; (Retraction of Publication)

The asthma epidemic.

Kuschner; (Comment, Letter)

Imaging in clinical medicine. Floating kidneys.

Myers, Chassot; (Case Reports, Journal Article)

Chronic kidney disease, anemia, and epoetin.

Roger; (Comment, Letter)

Treatment of restenosis with a paclitaxel-coated balloon catheter.

Sun, Eikelboom; (Comment, Letter)

Tolvaptan for hyponatremia.

Ozkan, Kirkpantur, Arici; (Comment, Letter)

Tolvaptan for hyponatremia.

Dawwas; (Comment, Letter)

Case records of the Massachusetts General Hospital. Case 7-2007. A 59-year-old woman with diabetic renal disease and nonhealing skin ulcers.

Bazari, Jaff, Mannstadt, Yan; (Case Reports, Clinical Conference, Journal Article)

Imaging in clinical medicine. Calcified left atrial thrombus.

Pappachan, Bino; (Case Reports, Journal Article)

Chronic kidney disease, anemia, and epoetin.

Ashrani, Rajkumar; (Comment, Letter)

Compulsory HPV vaccination.

Basu; (Comment, Letter)

Clinical practice. Pediatric strabismus.

Donahue; (Journal Article, Research Support, Non-U.S. Gov't, Review)

Bivalirudin in acute coronary syndromes.

Sanmartin; (Comment, Letter)

J Natl Cancer Inst

Local recurrence or cardiovascular disease: pay now or later.

Giordano, Hortobagyi; (Comment, Editorial)

Endotoxins in lung cancer prevention.

Boffetta; (Comment, Editorial)

Governments move to improve quality and cut costs.

Sinha; (News)

SERMs: meeting the promise of multifunctional medicines.

Jordan; (Journal Article, Research Support, N.I.H., Extramural, Research Support, Non-U.S. Gov't, Research Support, U.S. Gov't, Non-P.H.S.)

Stat bite: Currently approved oncology drugs.

none; (Journal Article)

NIH common fund concerns some in cancer research community.

Vanchieri; (News)

Longitudinal measurement of clinical mammographic breast density to improve estimation of breast cancer risk.

Kerlikowske, Ichikawa, Miglioretti, Buist, Vacek, Smith-Bindman, Yankaskas, Carney, Ballard-Barbash; (Journal Article, Research Support, N.I.H., Extramural)

National Cancer Act: a look back and forward.

Vanchieri; (News)

Re: Endogenous steroid hormone concentrations and risk of breast cancer among premenopausal women.

Micheli, Secreto, Meneghini, Krogh, Muti, Venturelli, Berrino; (Comment, Letter)

Lung cancer risk among female textile workers exposed to endotoxin.

Astrakianakis, Seixas, Ray, Camp, Gao, Feng, Li, Wernli, Fitzgibbons, Thomas, Checkoway; (Journal Article, Research Support, N.I.H., Extramural)

Lapatinib moves forward in inflammatory and early HER2-positive breast cancer trials.

Tuma; (News)

Re: Impact of classification of hilar cholangiocarcinomas (Klatskin tumors) on incidence of intra- and extrahepatic cholangiocarcinoma in the United States.

Matull, Khan, Pereira; (Comment, Letter)

A prostate-specific antigen-activated channel-forming toxin as therapy for prostatic disease.

Williams, Merchant, Garrett-Mayer, Isaacs, Buckley, Denmeade; (Journal Article, Research Support, N.I.H., Extramural, Research Support, U.S. Gov't, Non-P.H.S.)

Long-term risk of cardiovascular disease in 10-year survivors of breast cancer.

Hooning, Botma, Aleman, Baaijens, Bartelink, Klijn, Taylor, van Leeuwen; (Journal Article, Research Support, Non-U.S. Gov't)

The role of EXT1 in nonhereditary osteochondroma: identification of homozygous deletions.

Hameetman, Szuhai, Yavas, Knijnenburg, van Duin, van Dekken, Taminiau, Cleton-Jansen, Bovée, Hogendoorn; (Journal Article, Research Support, Non-U.S. Gov't)

Response: Re: Endogenous Steroid Hormone Concentrations and Risk of Breast Cancer Among Premenopausal Women.

Eliassen, Barbieri, Hankinson; (JOURNAL ARTICLE)

Response: Re: Impact of Classification of Hilar Cholangiocarcinomas (Klatskin Tumors) on Incidence of Intra- and Extrahepatic Cholangiocarcinoma in the United States.

Welzel, McGlynn, Hsing, O'brien, Pfeiffer; (JOURNAL ARTICLE)